I was recently invited to write an essay on Computing in the Year 2065 for a new Springer book edited by Prof. Andrew Adamatzky. My contribution is titled

**Reprogramming Matter, Life, and Purpose**of which first draft can be read**. I was also invited to write about how to be unconventional in science***here***which I did under the title****Paths to Unconventional Computing: Causality in Complexity**, available*.***here**
Algorithmic Machine IntelligenceUnlike traditional statistical machine learning, what we call Algorithmic Machine Learning or Algorithmic Machine Intelligence, is a new kind of hybrid AI that combines and takes the best of both worlds, symbolic computation epitomised by digital computers, and statistics epitomised by traditional machine learning. Without denying the success of machine and deep learning in some areas, especially in tasks of classification that have proven to be so prosperous especially in industrial applications. Computers, are much better than humans at doing math and making logical inferences, so how did we manage to make computers this dumb out of logically and mathematically highly literate calculators? Combining the power of Shannon Entropy and Kolmogorov-Chaitin complexity by way of Solomonoff-Levin Probability To objectively characterise an object is a major challenge in science. Few measures have the capabilities to do so, in particular, those that are algorithmic in nature rather than only statistical have greater chances to do so because algorithmic methods are, in principle, better equipped to avoid spurious correlations and to confound causality with regularity. However, algorithmic measures are ultimately impossible to calculate and thus scientists have avoided them for a long time. Nevertheless, approximations are possible and when combined with less powerful but more scalable measures they may offer the best of both worlds: a powerful but also scalable hybrid measure. In this paper we explore the capabilities and limitations of such a measure, one that combines two major indexes in complexity theory namely Shannon Entropy and Kolmogorov-Chaitin complexity putting both classical and algorithmic information theory to work together. We demonstrate that such a measure is well behaved, yields stable results even when potential issues arise, and numerical errors are either bounded or converge in the worse case to measures used in the field. Such error convergence also allows for corrections. In summary, an interesting hybrid measure able to divide and conquer a problem is presented and studied both theoretically and experimentally. See papers: J6, J17, J20, J22. And applications of these tools to several different areas. See papers: J16, J13, J10, J8, J4, J2, J18, J19, J21, J26, J27, J30, J25 and P10. See papers: J13, J16, J22, J21, P31, P32, P24 and more recently J44). Collaborators: Fernando Soler-Toscano, Narsis A. Kiani, Jean-Paul Delahaye, Nicolas Gauvrit, Jesper Tegnér. Funding: National Science and Technology Council of Mexico (Conacyt), John Templeton Foundation, Swedish Research Council.Algorithmic CognitionThe human mind is algorithmically biased to suit specific purposes. Some of these algorithmic mechanisms can replace previously considered biases based on previous experiences (e.g. the so-called system 1). We have known that random generation tasks, in which people have to generate random-looking sequences, are linked to some important aspects of mental and cognitive capacities. We have introduced a new approach to the study of the behaviour of animals and humans based on algorithmic information theory. We have shown that humans best outsmart computers when they are tested on randomness generation at the age of 25. When competing against all possible algorithms, we have found that human behaviour is at its most algorithmically random potential when reaching 25 years of age, thereby introducing a new measure of cognitive complexity possibly related to other biological and cultural aspects, such as creativity. Indeed, humans produce more randomness than most computer programs when they are 25 years old. In parallel, we are also working on measures of integrated information to profile brain networks. Relevant papers: J33, J18, J21, J25, J8 and survey P26 Main collaborators: Nicolas Gauvrit, Peter Brugger, Jesper Tegnér, Alberto Hernández, Antonio Rueda-Toicen, James Marshall and Juan Carlos López.Computation, Causality & Reprogramming LifeEquipped with the powerful measures I have developed with my team in the previous years, we now aim to tackle a fundamental challenge in science: that of developing tools for causal discovery. This in order to unveil design principles and generating mechanisms of arbitrary dynamic systems. In particular, the development of an interventional calculus based upon the theory of computability and algorithmic probability that identifies the key markers in genetic networks with which to steer and manipulate cell function and cell fate. The range of application of this work is very general and aims to generate effective intervention tools to steer the causal content and thus the fate of artificial and natural complex systems. I devise strategies to understand, test and reprogram artificial and natural systems as models of computation (see e.g. papers J24, J16, J9). I have also devised 2 measures for testing the algorithmicity and programmability of a system (see also in proceedings P22, P23, P15, P13). We are also introducing a perturbation-based calculus to study the information landscape of complex systems and networks capable of unveiling information on the energy landscape with a measure of algorithmic (re)programmability that connects the theory of dynamic systems with (algorithmic) information theory to reveal the dynamic landscape at the heart of the problem of causality. I use computer programs as models of the world. Determinism from classical mechanics implies that everything can be seen as a computer program and that the complexity of systems led purely by causal elements included in their description are dominated by their evolving time. This allow us to find clues to move systems from among different functions thereby effectively reprogramming them. Collaborators: Narsis A. Kiani, Jesper Tegnér, and Yanbo Zhang, Santiago Hernandez. See papers: J47, J44, J26, J27, J18, J29, J30, J31, J32 and proceedings P26, P27, and P29, P30.Funding: The Swedish Research Council (VR). Spatial & Molecular ComputingWhile cellular automata are a type of spatial computing, I have also explored some other types of spatial computing such as Wang tiles. I contributed a method based upon algorithmic complexity to analyze and characterize the conformational spaces of molecular-computing systems, with a view to better understanding and reprogramming natural systems such as chemical and biological molecules. The Wang tiles emulate Porphyrin molecules, the molecules that give the red color to your blood. We have shown how algorithmic complexity can inform the way in which computation can be driven towards different qualitative behaviours to accomplish different tasks. Collaborators: Germán Terrazas and Natalio Krasnogor. See papers: J34, P31, P32 and P24 and J16, J21, J13 and J29.DemonstrationsI have written many small pieces of software explaining a concept in science, mathematics or logic. Some of my favourites are: - Network Motifs and Graphlets
- World Metro Networks
- Complex Networks
- Shannon's Noisy-Channel Coding Theorem
- Zipf's Law Applied to Word and Letter Frequencies
- Cellular Automaton Compressibility
- Prediction and Entropy of Languages
- Multilanguage Word Lengths
- Applying the Pólya-Burnside Enumeration Theorem
- Cellular Automata Sensitivity to Initial Conditions
- Fractal Dimension versus Time Complexity in Turing Machines
- Speedup and Slowdown Phenomena in Turing Machines
- Random Walks in Elementary Cellular Automata
- Random Number Generation
- John von Neumann's First Pseudorandom Number Generator
- Generating Random DNA Sequences
- Infinite Monkey Theorem
- Kolmogorov Complexity of 3×3 and 4×4 Squares
- Skolemization
Public Understanding & EngagementI consider important to contribute to places like Quora, here are some of my favourite answers and questions: Answers:- What makes people think a person is intelligent even though he/she is not?
- What are the most common misconceptions about mathematics?
- Is our universe Turing-complete?
- What are your thoughts on Eugene Goostman passing the Turing test?
- How was Wolfram Alpha made?
- Is the human brain a universal Turing machine?
- Is the game of GO Turing-complete?
- What do the # and @ symbols mean in the Wolfram Language and WA?
- What is the relationship between the size of a Turing machine and its runtime complexity?
- Could we be living in a procedurally generated world?
- Is Wolfram's Principle of Computational Equivalence simply an extension of the Church-Turing thesis?
- Among all possible Turing machines how common are universal Turing machines?
- How might P vs NP may affect bioinformatics?
- Could CRISPR be classified as a paradigm shift?
- Why do we differentiate between universal Turing machines and normal Turing machines?
- What does the spectrum of the graph Laplacian tell us about a network?
- What implications does Algorithmic Information Theory have towards metaphysics?
- Can the universal Turing machine be considered a special case of a formal axiomatic system?
- If you were to compare the entropy of a dog to that of a bucket of water which will have a higher entropy?
- Is the entropy of a graph related to the concept of entropy in Information Theory?
- What would happen if someone found a pattern in pi?
- Are information entropy and probabilities the same?
- Have we proven the laws of physics are the same anywhere in our visible universe?
- What's an intuitive way to understand entropy?
- Is there anything 100% random?
- If I manually modified one character digit of a pseudo randomly generated string would I make it less pseudo random?
- What are the criticisms of Tononi's Integrated Information Theory?
- Can a Turing machine simulate a neural network?
- In layman's terms what does Turing complete mean?
- Can Erik Verlinde's entropic gravity be connected with Wolfram's cellular automaton?
- Are there any programming languages that are not Turing complete?
- How small can a Turing machine get?
- What is the cardinality of computable sequences in the sense of a Universal Turing Machine?
- Is algebra 'Turing-complete'?
- Is E Coli Turing-complete?
- Is True Random number generation possible?
- Can a computer generate a truly random number?
Questions:- Are holograms truly 2-dimensional?
- Does Wiles' proof of Fermat's Last Theorem require the full power of ZF or of ZF+C or any other non constructive axiom implying C?
- What is the mathematical basis to believe that polls of polls are a better indicator than individual polls?
I encourage other colleagues to do the same to fight misinformation in all its forms. Marches for science are great but I am certain that people expects more effective ways from us. In my opinion there are two activities that can be done with immediate impact: **Visit schools**and explain what are scientific concepts such*as rational thought, logical inference, statistical evidence, what is a control experiment*and a*reliable source*. Start with your closest circles, from parents to siblings. Explain why e.g. the*History Channel*cannot be a reliable source (a business with the sole agenda to attract viewers and make money) or why to vote for extreme views to punish governments is not a real solution for a possible real diagnosis.**Engage with public on public matters**, including science but also politics. To be a scientist does not mean to hold the right political view, but it does mean that you may have a better chance, in average, to chain logical consequences to causes and solutions.
Massive Open Online Course: Algorithmic Information Dynamics: From Networks to Cells. Life from a Computational Perspective. Supported by the Foundational Questions Institute, the Wolfram Foundation and the Santa Fe Institute, I am preparing a course on Information Dynamics of Complex Networks with my colleagues Narsis A. Kiani and Alyssa Adams (teaching assistant). The course will draw heavily upon information theory and complexity science to explore the cutting-edge field of systems and network biology. This will be a computer-program oriented course on tools of information and computer science for computational biology to explore the surprising origins of life's complexity. Visit the course here. Funding: The Foundational Questions Institute (FQXi), Wolfram Foundation and the Santa Fe Institute. |
Algorithmic Information Dynamics (AID)AID is a body of research for causal discovery and causal analysis that consists of first principles, tools and methods to automatically generate and study sets of generative computable candidate models able to explain natural phenomena in particular adaptable living systems. Unlike other approaches to causation, AID serves both causal analysis but also causal discovery (which is fundamental for causal analysis) at the same time. Just as Gregory Chaitin, the founder of the theory of Algorithmic Information explains that algorithmic complexity is the result of putting Turing's computability theory and Shannon's information theory in a blender, AID is the result of putting algorithmic complexity and causation (discovery and analysis) together. AID constitutes a different approach and an alternative one to approaches of statistical nature as it removes probability distributions from the centre of candidate generative models thereby taking a step forward towards truly leaving old practices such as correlation (and regression) behind in the practice of scientific explanation. AID can be seen as an algorithmic calculus to study objects in the software space that is able to guide a search to find the set of most likely computable generative models underlying a piece of observable data. Pervasiveness of Turing-universality and Reprogramming the world While it was known that Turing universality could be achieved with extreme simplicity (in terms of resources i.e. state+symbols), it was not known how pervasive it was. Once a computer program is Turing universal it can simulate any other computer program. Our work is the first to shed some light on quantifying how pervasive Turing universality may be. It turns out that the number of these, are of density 1, meaning that basically almost all computer programs are capable of universal computation with the appropriate initial conditions. We also showed how computer programs previously thought to be essentially different, can actually simulate other computer programs of unbounded complexity. In this sense, we have shown a complete collapse of the so-called Wolfram classes in a fundamental way, but we have also shown that there is an asymmetry in the number of possible compilers accessible for a given exhaustive compiler exploration time to perform these simulations that reintroduces a hierarchy re-establishing the classes from an epistemological perspective. The fundamental collapse, however, strengthens Wolfram so-called Principle of Computational Equivalence. By way of the mentioned asymmetry we also defined a topological measure based upon simulation networks establishing the degree of difficulty to find the right compilers to make a program simulate others. All this constitutes a completely novel Bayesian approach to Turing universality and a powerful framework to reprogram system's behaviour. These ideas are also consistent across my many first views on programmability based on Turing's 'imitation game' for testing black box capabilities from input perturbation (interrogation) and output assessment. We propose to use the tools of algorithmic complexity to study such mappings as an ultimate behavioural evaluation framework. Main collaborators: Juergen Riedel. See papers: here and P28.Numerical approximations to Algorithmic Probability vindicate Occam's razor simplicity biasOccam's razor is a principle that establishes that among competing hypotheses, the one with the fewest assumptions should be selected. There have been attempts to derive Occam's Razor from probability theory, notably by Harold Jeffreys and E. T. Jaynes. Using Bayesian reasoning, a simple theory is preferred to a complicated one because of a higher prior probability; however it leads to a circular argument. Solomonoff and Levin's approach, on the other hand, provides a non-circular sound justification for the prior, favouring simplicity over complexity by assuming a recursive generating mechanism. The main idea is that if a computer program is a generating cause for some phenomenon, the shorter the program the greater its likelihood of being produced by chance than a larger one. Yet, Occam's principle is simply encoded or transformed into favouring shorter computer programs over longer, something that has triggered some criticisms (e.g. Kevin Kelly work at CMU). This is because it was unknown whether the theory of algorithmic probability corresponded to reality. Which is where I came in, demonstrating that, when taking all programs up to a fixed size, the most likely computer program that produces an output is also the shortest one. This means that, indeed, determinism (recursiveness) alone leads to the confirmation of Occam’s razor, and it shows the power of using computation in philosophy. My research reveals a far reaching result showing real empirical evidence of the validity of Occam’s razor as a direct consequence of a purely mathematical, rather than a philosophical, principle, one that only requires---as predicted by algorithmic probability---determinism as a sufficient condition in the form of algorithmic computation based upon a Bayesian model, with Solomonoff and Levin's Universal Distribution as a prior. I have provided numerical evidence in favor of Levin's Universal Distribution and Solomonoff's algorithmic probability bias towards simplicity. See papers: J44, J13, J16, J22, J21, P31, P32 and P24. Funding: National Science and Technology Council of Mexico (Conacyt).A Measure of Dynamic ComplexityUnlike most complexity measures that are designed for static objects except those related to dynamical systems (e.g. Lyapunov exponents), I have led the introduction of a measure of reprogrammability designed to characterize the dynamic algorithmic complexity of an object evolving. The measure is universal in the sense that it can deal with any computable feature that the system may display over time either by itself or as a result of an external perturbation/intervention/interaction. I started developing these ideas in 2012, during the Alan Turing Year after the realization that most systems in nature are like black boxes that we cannot open and fully understand and that we are therefore left with approaches not very different to the black box approach of Alan Turing to deal with the challenge and question of machine intelligence with his imitation game. What I conceived was a test for systems where questions would be inputs and answers would be compressed, one would then see the variation among the compressed outcomes for different complexity answers and assess the system's capabilities. The idea has evolved into a perturbation algorithmic calculus able to characterize artificial and biological systems. Computational Network Cosmology & Questions of Fine-tuningThe emergent properties of the universe are traditionally attributed to special values of fundamental constants. The universe in its present state is lumpy with structures such as stars and galaxies, black holes and life, at least according to our best models based on the available observable data. But while the presumed early state and the projected late universe are similar in that they are both characterized by minimal entropy, this is so for different reasons. More importantly, structures prevail and entropic histories allow order hitherto only explained by anthropic principles. Our current on-going project explores these questions by performing computer simulations to analyze the initial conditions and entropic evolutions of computational universes. We test whether habitable zones of increasing entropy and free algorithmic complexity where structures like life may exist in candidate universes are common and robust or rare and fragile. Our approach tackles a foundational question in modern physics related to cosmology and complexity theory (and other areas such as network biology where causal networks of interacting units are fundamental) concerning the specificity of our universe and the initial conditions that were needed to give rise to and sustain structure, life and intelligence. Collaborators: Jurgen Riedel. Funding: The John Templeton Foundation.The Busy Beaver Conjecture I have proposed what I call the Busy Beaver conjecture, establishing that all Busy Beaver Turing machines (with more than 2 states) are candidates for Turing universality. This is because these Turing machines are the deepest in the Bennett sense, they are able to halt but also to display the greatest algorithmic complexity. I came up with a new Bayesian approach to gather evidence in favour of Turing universality by way of intrinsic universality (which is a stronger form of Turing-universality) by behavioural qualitative reprogramming. Collaborators: Juergen Riedel. See papers: J7 and P28 and a forthcoming one currently in the ArXiv.Computational PhilosophyI am a strong supporter and pioneer of a strong form of Computational/ Experimental Philosophy (a weaker version has been suggested, consisting of viewing philosophy through computation and vice versa). Almost every paper of mine follows a common structure starting from a general philosophy-of-science question. Then I perform numerical experiments based upon small computer programs as models of the phenomenon in question. Finally, I base my conclusions on the experimental results obtained.
I have strong interests in topics at the intersection of computation and philosophy, such as simulation, reality and fine-tuning, all of which I pursue by performing actual numerical experiments with computer programs as possible models of the world. I have undertaken a 'deep space' exploration of the computational and mathematical universes. You can find this approach in almost every paper of mine. Symmetry Breaking via Computation: An Algorithmic View of the UniverseI have shown that the emergence of structure and symmetry breaking can be derived from perfectly symmetric rules. Indeed, symmetry breaking is key not only to connecting e.g. Turing's theory of universal computation with his theory of biological pattern formation--morphogenesis as he saw in the breaking of symmetry the key to pattern formation-- but to also explaining how this symmetry breaking emerges from the perfect symmetry of deterministic rules via the highly asymmetric Universal Distribution (Levin, Solomonoff) in the way in which computable outputs distribute, giving meaning to the concept of randomness versus simplicity. I illustrated the way in which algorithmic probability differs from classical probability theory. Foundational and technical papers include: J24, J13, J7, and J6.A hierarchy of programmability and sub/universal systems: Along these lines, I came up with a hierarchy of programmability based on a variability and controllability analysis that in turn is based upon a novel approach to testing qualitative behaviour using a form of an 'algorithmic Turing test' with a universal compressor evaluating the output of other computer programs seen as black boxes. Along these lines, I have found that even processes that are weaker than Turing universal computers follow the laws of Algorithmic Information Theory and distribute their output according to the so-called Universal Distribution which is key to understanding the world and how it may behave and can be understood and reprogrammed. See papers: J49, J9, P28, P22, P17, and P13.Algorithmic Data AnalyticsBecause data of interest is usually, if not always, produced by mechanistic and algorithmic causes, I have proposed an empirical Bayesian approach to science where uninformative priors are not uniform flat (said uninformative) distributions but Levin's so-called Universal distribution based on algorithmic probability (Solomonoff). I am thus introducing different tools and methods than those based on (statistical) machine learning and Shannon entropy which are more likely to produce false models from spurious correlations specially in the advent of Big Data. To this end I am introducing algorithmic-information tools better equipped to model and deal with the discovery of first and design principles and generating mechanisms (causes). See papers: J18, J20, J26, J27, J31, J31, J32 and P29, P30, P26.FundingOn top of the John Templeton Foundation, the Swedish Research Council (VR), the Foundational Questions Institute (FQXi), and the Sta Fe Institute mentioned above, I have been supported in different times by other funding institutions to which I am grateful, including: Conacyt, AztraZeneca, Strategic Area Neuroscience (StratNeuro), the Wolfram Foundation, Wolfram Research, the King Abdullah University of Science and Technology (KAUST) and the Silicon Valley Community Foundation. Direct support from grants where I am the main PI amount to around 1 Million USD.Konrad Zuse's Calculating Space RevisionWith Adrian German (Indiana U. Bloomington), I rewrote (and made some corrections) to Konrad Zuse's Calculating Space ( Rechender Raum), with permission from Zuse's eldest son (and from MIT who made the first English translation), Horst Zuse, with whom I had the chance to meet and dine with in Berlin, Germany in 2006. The file can be found in the ArXiV here and in my A Computable Universe book. |
Graph and Tensor ComplexityI have introduced native measures of universal complexity i.e. independent of description language and selected feature(s). This was by way of algorithmic probability based on a generalization of a universal n-dimensional Turing machine rather than the a unidimensional tape. I have shown powerful properties of the measure, correlated to intuitive and formal symmetries, and other algebraic and even physical properties. My approach is a solution to the challenge of graph complexity previously identified by Gell-mann and Feldman as an open problem. See papers: J19, J29, J44. Collaborators: Fernando Soler-Toscano, Santiago Hernández, Antonio Rueda-Toicen, Narsis A. Kiani, Kamaludin Dingle, and Ard Louis.Entropy-fooling Graphs To illustrate the problem of ad-hoc measures I constructed a network whose node degrees follows the so-called Champernowne artificially-constructed Borel normal constant thus indicating maximal entropy (and maximal entropy rate) by construction, though its edge density asymptotically approximates zero and thus the entropy rate of its adjacency matrix also converges to zero, in contradiction to the entropy rate of its degree sequence. So we presented a graph that, depending on the choice of description, has the same maximal and minimal information-content according to Shannon entropy for the same uninformative choice of distribution (uniform) in both cases, thereby establishing the fragility and description-dependent nature of Shannon entropy. Main collaborators: Narsis A. Kiani, Jesper Tegnér. See paper: J35.The Online Algorithmic Complexity Calculator (OACC)The OACC is a powerful free online calculator designed to provide estimations of algorithmic complexity (a.k.a. Kolmogorov-Chaitin complexity) and Algorithmic Probability for short and long strings, and for 2-dimensional arrays better than any other tool, and estimations of Bennett's Logical Depth (or LD) for strings hitherto impossible to estimate with any other tool. These 3 measures constitute the most powerful and universal algorithmic measures of complexity. It uses a method (called BDM) based upon Algorithmic Probability, which is compatible with---but beyond the scope of---lossless compression algorithms that are so widely used to estimate algorithmic complexity. Implementations of lossless compression are, however, entirely based upon Shannon entropy (e.g. LZ, LZW, DEFLATE, etc) and thus cannot capture any algorithmic content beyond simple statistical patterns (repetitions).In contrast, our BDM approach not only considers statistical regularities but is also sensitive to segments of an algorithmic nature (such as in a sequence like 12345...), which S and lossless compression algorithms would only be able to characterize as having maximum randomness and the highest degree of incompressibility. Moreover, unlike K (thanks to the Invariance Theorem) both Entropy and Entropy-based compression algorithms are NOT invariant to language description and are therefore neither suitable nor robust as measures of complexity. The OACC has been featured in the Newsletter of the London Mathematical Society and can be accessed here. Funding: Oxford University, Swedish Research Council.Cellular Automata, Emergence & UndecidabilityI have contributed with formal behavioural classifications based on algorithmic complexity and asymptotic behaviour, giving answer to one of Wolfram's open questions on the fraction of behaviour classes in CA rule spaces (see paper J15), a classification by compression (paper J1), interaction of CAs (see paper P24 and more forthcoming) and a new proof of universality in Elementary Cellular Automata (ECA) (to be available soon). Other papers on CA: J34, J12, J22 and J24. We have numerically explored the concept of computation to enrich the philosophical discussion about its origin and implications. See paper: J5. Funding: Foundational Questions Institute (FQXi)Algorithmic Evolution & Open-ended Evolution (OEE)We have explored how non-trivial deterministic systems can display unbounded change in complexity. We have proved that undecidability is essential for legitimate forms of OEE definitions and that this is also deeply connected to open and closed systems, with self-referential state-dependent systems displaying a greater degree of versatility. For OEE to be possible (under reasonable definitions), then open and undecidable dynamic systems are necessary. But even more important are the results that we have reported regarding substituting uniformly distributed mutations for mutations occurring according to the so-called Universal Distribution that predicts the way in which rule-based systems behave according to the computational power of their source (see paper J49). It turns out that this simple and sound substitution (because neither the world nor physical laws are truly random) can significantly speed up evolutionary convergence, may justify the need of genetic memory and modularity (e.g. gene organization) and even phenomena such as diversity explosions and mass extinctions that have no extrinsic (e.g. climate) explanations. Main collaborators: Santiago Hernández, Alyssa Adams, Sara I. Walker, Paul Davies, Joost Joosten. See papers: J46, J34, P31, P32 and P24. Tradeoffs of Complexity MeasuresI am deeply interested in the interplay of complexity measures, there is no shortage of number of proposed ad hoc measures yet very little is known about their connections or independence among each other, I have explored the connection between algorithmic measures and the connection and ways to exploit the way of Both statistical, combinatorial and algorithmic measures, and 2 the ontological and epistemological properties of complexity measures, i.e. The differences in theory and practice. For example, algorithmic measures are said to be intrinsic but at the end they require an observer in the form of a compression algorithm or reference Turing machine and are thus less intrinsic than theoretically expected and rather subjective in the choice of both reference machine or compression algorithm, Entropy is also said to be only syntactic and actually equal to algorithmic complexity because one can always update the probability distribution to represent the recursive nature of an object, but in practice the observer is usually uninformed and has no access to the true nature of the source and thus relies on its belief to make a probability distribution choice which in the face of no information will be the uniform distribution. This means that in practice Entropy will be measuring the ignorance of the observer for a specific description of an object. I have also explored the relationship between measure of fractal dimension and computational complexity. For example, Sole measure of modularity can be represented in various ways, one way is by an average low value of excess entropy which is a measure that quantifies the difference in complexity among different scales under coarse graining, and it also means that modular systems will tend to distribute in scale free fashion. See papers: J29, J17, J3, J15, J23, J22, J1 and proceedings P4, P9, P25 and P10. See also important preprint here. Collaborators: Joost Joosten, Fernando Soler-Toscano, Narsis A. Kiani.Semantics & the Computational Value of InformationConcerned by the semantics of information, my collaborators and I have looked into different aspects of value in producing and using information for computation. Information is relative; it only makes sense as mutual information. It is indistinguishable from meaning as opposed to (algorithmic) randomness and how different measures of complexity relate to each other and how can they be classified in major groups also provides an all-encompassing natural classification of information. I am helping to understand the meaning of meaning and information in the context of algorithmic complexity. We have found that strategies implemented in automatic theorem proving involve an interesting tradeoff between execution speed, proving speedup/computational time and usefulness of information. And that theorem provers are subject to the same non-linear tradeoff between time and size as computer programs are, affording the possibility of determining e.g. optimal timeouts and waiting times in mathematical proving. Moreover, we have substantiated the way in which intelligent animals make use of the structured nature of the world to extract information and develop/evolve learning mechanisms.Collaborators: Joost Joosten, Wilfried Sieg, Santiago Hernández and Francisco Hernández-Quiroz, James Marshall. See papers J10, P10 and preprint of forthcoming paper here.Contributions to Industry I have contributed some built-in functions to the core kernel of the Wolfram Language and Mathematica, functions mostly related to computational linguistics such as WordData (based on Princeton's WordNet[]), LanguageData[] and DictionaryLookup[]. I have also contributed to the creation and development of Wolfram|Alpha, the computational knowledge engine, on aspects of languages and linguistics, theorem proving, automatic data curation, knowledge discovery and fast prototyping. I was part of the first original team that developed Wolfram|Alpha working with only 4 or 5 other people in a small office in Cambridge, MA in Stephen Wolfram's Special Projects group. Current and future directionsCurrent and future directions of research include: algorithmic feature selection and model generation; connections between dynamic algebraic (spectral) graph theory and algorithmic information (see paper P29); non fine-tuned models of causal networks; and applications of our algorithmic calculus to disentangling interconnected networks. The Vermont & Bloomington RoundtablesI organized and moderated what I think will historically be among some of the most interesting public discussions of some of the most brilliant minds in the science of the digital. The two roundtables included thinkers such as Gregory Chaitin, Stephen Wolfram, Edward Fredkin, Anthony Leggett, Rob de Ruyter, Tommaso Toffoli, Karl Svozil, Cristian Calude, and Paul Davies. Transcripts of the roundtables can be found in my edited volumes Randomness Through Computation and A Computable Universe. I am in debt to Adrian German for his help in co-organizing with me one of the roundtables.Creativity in CookingIn my personal quest to understand the process of, and the sources of creativity, I have explored apparently disparate areas, such as cooking. I have taken courses at the Cordon Bleu in Paris and London, at Brookes University and the Raymond Blanc Cookery School in Oxford, and private courses in Tokyo. In my personal view, a good chef is a cook that becomes a scientist in the kitchen, mastering the right ingredients between precision and experimentation in the process of innovation. I have explored around 30 Michelin star restaurants around the world from Europe (the UK, France, Spain, Italy, Denmark, Sweden, Hungary) and Asia (Thailand, Japan, China, Singapore and Hong Kong) and some of the top 50 San Pellegrino restaurants in countries such as Denmark, Spain, Italy, the UK, Spain, Sweden, France and Mexico. After a list of around 50 Michelin stars I have now mostly replaced such an expensive practice for the challenge of finding restaurants worth one or more stars but not yet having any. |

**Key concepts from my research explained in**

a computable piece of uncomputable art:

**Key concepts from my research explained in**

a computable piece of uncomputable art:

a computable piece of uncomputable art:

This picture, titled “
Visualising the Computational Universe: Runtime Space in a Peano Curve," won me 1st. prize in the Computational Imagery category of the "2011 Kroto Institute Scientific Image Competition" held in the UK. Here is the explanation: It represents a small slice of the computational universe of all possible computer programs.Each pixel represents a computer program with empty input running on an abstract computer (a Turing machine). The color indicates the runtime of the program upon completion of its computation. The darker a pixel the longer the program took to produce its output. White pixels are computer programs that do not produce any output because they never halt (just as happens when your computer stalls forever, sometimes making you reboot).Red pixels are the computer programs that take the longest time—relative to other programs of the same size—before finishing (they are also called Busy Beavers). I call this color type coding the computability spectrum. Programs were sorted by size from smallest to largest (in terms of number of instructions) in such a way that one could be certain that any program would eventually be reached (including versions of MS Windows and Angry Birds that can be encoded as one-run computer programs).Because there is no upper limit to the size of programs, the space of all computer programs is infinite but discrete, perhaps mirroring our own world. Because an enumeration of computer programs is linear (you start with program 1, then proceed to program 2, and so on) pixels depicted in this 2-dimensional figure are disposed along a "space-filling" Peano curve. This is a curve that guarantees that 2 contiguous elements in the enumeration remain as close as possible to each other in the 2D configuration. The picture has the striking particularity that it is ultimately uncomputable. Imagine you point a telescope and take a picture of an object in the computational universe for which some pixel values cannot be determined, not only in practice but in principle-- that is, no matter how good your camera, or how many 'terapixels' some future version of it may have. This slide of the computational universe was only possible because it is a tiny region of small computer programs for which all pixels can be determined by zooming in deep enough.However, Gödel and Turing proved that if you zoomed out to a larger view of the computational universe, the picture would begin to look completely blurry because pixel colours would not be determinable. In other words this picture is the inverse equivalent of Hubble's Deep Field space--the larger the space field the blurrier.While we can only have access to the visible universe determined by the speed of light, we can only see a small part of the computational universe due to similar limitations both physical and computational (it seems we cannot build more powerful computers than the ones we already have to overcome these limitations). Hence, most of the computational space will remain unknowable, not only due to a limitation of resources but due to a fundamental barrier established in the digital world and extending into our own reality.Only incremental improvements to this picture are possible. While the picture is ultimately uncomputable and unattainable, one can make an informed guess as to what it would look like if zooming out. The theory predicts the average color of the picture at a greater scale, this theory being the theory of algorithmic probability, closely related to what is known as the Chaitin Omega number, or the halting probability. It turns out that the picture will be mostly white, as in an ever expanding universe, finding computer programs that halt and produce something will be increasingly harder. Indeed, most programs will never halt, and those that halt will do so relatively quickly in proportion to their size (see paper P10).Algorithmic probability also tells us that most programs will produce an output following exponential decay (-log_2 Pr(s)) hence most of them will produce the same strings and the fewest will produce algorithmically random digital sequences. In other words, among the computer programs that do produce an output, most of them will be highly ordered, as if they were creating a structured digital universe of highly ordered patterns out of nothing (just like ours). Some of these programs that produce the same output may do so faster than others, but precisely how much faster a program can be is another open foundational question and one of the greatest challenges in mathematics and computer science. If it were possible to find a program considerably faster than any other, then everything could be computed in 'reasonable' time, regardless of the apparent difficulty of the computation.A full technical explanation of some of this and of how the image was generated was published in this paper: H. Zenil, From Computer Runtimes to the Length of Proofs: With an Algorithmic Probabilistic Application to Waiting Times in Automatic Theorem Proving In M.J. Dinneen, B. Khousainov, and A. Nies (Eds.), Computation, Physics and Beyond International Workshop on Theoretical Computer Science, WTCS 2012, LNCS 7160, pp. 223-240, Springer, 2012. A preprint is available online here. |